PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.322470.1
Common NameCsa_3G002970, LOC101210125
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 721aa    MW: 79001.5 Da    PI: 4.93
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.322470.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.63e-055385751355
                     HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     R++i +++ eLre++P+ a      K s  + L ++++Y+  Lq
  Cucsa.322470.1 538 RQQIQDRIKELREIIPSgA------KCSIDSLLDRTIKYMLFLQ 575
                     89***************77......7777779********9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.8E-15287IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000830.00248521575No hitNo description
PROSITE profilePS5088811.426525574IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.6E-5538583IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.8E-6538581IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 721 aa     Download sequence    Send to blast
MLQQVHMLGE GVIGTAAFTG KHQWIFSDAS NGEWNSSMFQ DNLELQQQFS YGVKTVAVIP  60
VHPHGVIQLG STHKIWESLE ILANAKRSLC EVINGGGLTL EKTTCMASST DIAHYNDLFT  120
SIVLPANSDD WSLSAMHNNS HTDFTRKSYA SFDKQPAFDT SSYFSKSSCE NSVLTSSELL  180
PASDIREQDA QYPSYSDANV LDFCRNTVEF GNGSSTFASV SSGTGSLHMD NDQQSAQLFS  240
MNEGELTDSI NSLPDFCDKH LSEDFTMDLP DISFVDDLFQ WFDSSTENGT NGATATLSHN  300
LLHVTGVSTS SSNLVEVNKF VDDSSKVSVV SAQSLITNTS KSSEQDNTII MQNAKDKLFD  360
SLGLGTGCPV GKTWDSMITD THGSYSGGCN SMSTCTSKLA TGSTDLPRKR LFWELGIEEL  420
LDGLSNTSSA TKSSVENHHS IGSRRSKMER LSFDSNPIQL LDPCTSMNLT QPSCTVGRFP  480
CKKEAVPKSQ VSSWIDDSYS TNIGGSILEL SHKSEEPAKI CKKRAKPGES NRPRPKDRQQ  540
IQDRIKELRE IIPSGAKCSI DSLLDRTIKY MLFLQSVTKY ADKLKETNKP KLIDQRDGVA  600
VNDKCITERG SGGVTWAFKV GATPTVCPVI VEDLSSPGQM LVEMLCEERG FFLEIADMIR  660
SYGLTILKGV MEIREDKIWG QFVVEVKVNA NQSITRINVF LSLMELLQQT NIGGTEAVAN  720
*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818600.0LN681860.1 Cucumis melo genomic scaffold, anchoredscaffold00021.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004146200.10.0PREDICTED: transcription factor bHLH157
TrEMBLA0A0A0L1P10.0A0A0A0L1P1_CUCSA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69551621
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31280.12e-50conserved peptide upstream open reading frame 7
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]